Description
protein tyrosine phosphatase, non-receptor type 7
Synonyms
LC-PTP, HEPTP
Location
Chromosome 1: 202,147,013-202,161,588 reverse strand.
VEGA68:CM000663.2
About this gene
This gene has 19 transcripts (splice variants).
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| PTPN7-001 | OTTHUMT00000087512.1 | 3765 | 465aa | OTTHUMP00000034113 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS1423 | - | |
| PTPN7-003 | OTTHUMT00000087514.1 | 3265 | 399aa | OTTHUMP00000034115 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS1422 | A0A024R9A7 | |
| PTPN7-005 | OTTHUMT00000357717.1 | 1432 | 441aa | OTTHUMP00000216732 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | J3KR55 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| PTPN7-013 | OTTHUMT00000357725.3 | 673 | 122aa | OTTHUMP00000216738 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | H7C4T8 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| PTPN7-017 | OTTHUMT00000357729.2 | 577 | 153aa | OTTHUMP00000216741 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | C9IYI6 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| PTPN7-015 | OTTHUMT00000357727.2 | 575 | 153aa | OTTHUMP00000216739 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| PTPN7-012 | OTTHUMT00000357724.3 | 560 | 102aa | OTTHUMP00000216737 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | C9JBA9 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| PTPN7-016 | OTTHUMT00000357728.2 | 551 | 140aa | OTTHUMP00000216740 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | E9PE54 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| PTPN7-020 | OTTHUMT00000357732.3 | 550 | 163aa | OTTHUMP00000216743 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | H7C5I3 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| PTPN7-018 | OTTHUMT00000357730.1 | 542 | 154aa | OTTHUMP00000216742 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | E7EUM0 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| PTPN7-006 | OTTHUMT00000357718.1 | 1115 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| PTPN7-011 | OTTHUMT00000357723.1 | 2689 | 360aa | OTTHUMP00000216736 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | A0A024R963 | |
| PTPN7-009 | OTTHUMT00000357721.1 | 1463 | 140aa | OTTHUMP00000216734 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| PTPN7-007 | OTTHUMT00000357719.1 | 1189 | 76aa | OTTHUMP00000216733 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| PTPN7-010 | OTTHUMT00000357722.1 | 1147 | 116aa | OTTHUMP00000216735 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | F8WF66 | |
| PTPN7-004 | OTTHUMT00000087515.2 | 1595 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| PTPN7-014 | OTTHUMT00000357726.1 | 545 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| PTPN7-008 | OTTHUMT00000357720.1 | 1061 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| PTPN7-019 | OTTHUMT00000357731.1 | 573 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
