Description
synaptophysin-like 1
Location
Chromosome 7: 106,090,503-106,112,576 reverse strand.
VEGA68:CM000669.2
About this gene
This gene has 8 transcripts (splice variants), 6 orthologues and 3 paralogues.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| SYPL1-002 | OTTHUMT00000349222.1 | 2151 | 241aa | OTTHUMP00000212301 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS47685 | - | |
| SYPL1-001 | OTTHUMT00000349221.1 | 2127 | 259aa | OTTHUMP00000212300 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS5736 | A4D0R1 | |
| SYPL1-004 | OTTHUMT00000349224.1 | 1193 | 224aa | OTTHUMP00000212302 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | C9JYN0 | |
| SYPL1-005 | OTTHUMT00000349225.1 | 1017 | 148aa | OTTHUMP00000212303 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | H7C4J8 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SYPL1-006 | OTTHUMT00000349226.1 | 4417 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| SYPL1-008 | OTTHUMT00000488185.1 | 835 | 135aa | OTTHUMP00000281299 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | A0A0U1RQT9 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SYPL1-007 | OTTHUMT00000349227.1 | 545 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SYPL1-003 | OTTHUMT00000349223.1 | 478 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
