Description
protein tyrosine phosphatase, non-receptor type 6
Synonyms
SHP-1, HCP, PTP-1C, HCPH, SHP1
Location
Chromosome 12: 6,946,468-6,961,316 forward strand.
VEGA68:CM000674.2
About this gene
This gene has 22 transcripts (splice variants) and 1 orthologue.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| PTPN6-008 | OTTHUMT00000400023.1 | 2245 | 595aa | OTTHUMP00000238912 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS44820 | P29350 | |
| PTPN6-001 | OTTHUMT00000400019.1 | 2159 | 597aa | OTTHUMP00000238910 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS41744 | Q53XS4 | |
| PTPN6-018 | OTTHUMT00000400015.2 | 650 | 130aa | OTTHUMP00000238908 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| PTPN6-023 | OTTHUMT00000400030.2 | 592 | 150aa | OTTHUMP00000238915 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| PTPN6-014 | OTTHUMT00000400022.2 | 579 | 165aa | OTTHUMP00000238911 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| PTPN6-021 | OTTHUMT00000400031.2 | 570 | 144aa | OTTHUMP00000238916 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| PTPN6-012 | OTTHUMT00000400027.2 | 959 | 72aa | OTTHUMP00000273596 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| PTPN6-019 | OTTHUMT00000400017.1 | 656 | 58aa | OTTHUMP00000238909 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| PTPN6-013 | OTTHUMT00000400033.1 | 602 | 56aa | OTTHUMP00000238917 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| PTPN6-016 | OTTHUMT00000400029.2 | 543 | 60aa | OTTHUMP00000238914 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| PTPN6-004 | OTTHUMT00000400036.1 | 705 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| PTPN6-005 | OTTHUMT00000400038.1 | 673 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| PTPN6-007 | OTTHUMT00000400032.1 | 664 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| PTPN6-011 | OTTHUMT00000400025.1 | 592 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| PTPN6-010 | OTTHUMT00000400018.1 | 564 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| PTPN6-025 | OTTHUMT00000400020.1 | 538 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| PTPN6-003 | OTTHUMT00000400026.1 | 2412 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| PTPN6-002 | OTTHUMT00000400024.1 | 2043 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| PTPN6-022 | OTTHUMT00000400034.1 | 907 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| PTPN6-006 | OTTHUMT00000400037.1 | 795 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| PTPN6-024 | OTTHUMT00000400021.1 | 759 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| PTPN6-015 | OTTHUMT00000400028.1 | 513 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
