Transcript: SS18L1-001 OTTHUMT00000080002.4

Description

synovial sarcoma translocation gene on chromosome 18-like 1

Location

About this transcript

This transcript has 7 exons and is annotated with 6 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
SS18L1-003	OTTHUMT00000080004.2	4493	396aa	OTTHUMP00000031468	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS13491	O75177
SS18L1-004	OTTHUMT00000080005.3	781	128aa	OTTHUMP00000031469	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
SS18L1-001	OTTHUMT00000080002.4	899	211aa	OTTHUMP00000031467	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
SS18L1-002	OTTHUMT00000080003.1	456	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-

Summary

Statistics

Exons: 7 Transcript length: 899 bps Translation length: 211 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 4, last modified on 28/02/2014 (Created on 17/03/2003)

Alternative symbols

RP5-1005F21.1-001

Remarks

synovial sarcoma translocation gene on chromosome 18-like 1

this variant and variant fragment .3.2 could be part of one single variant

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 62,163,458-62,180,284 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000492466

Curation Method

Manual annotation from Havana