Transcript: SCN3A-010 OTTHUMT00000492664.1

Description

sodium channel, voltage-gated, type III, alpha subunit

Location

Chromosome 2: 165,087,542-165,203,881 reverse strand.

About this transcript

This transcript has 28 exons and is annotated with 65 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000044171 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
SCN3A-001	OTTHUMT00000102655.3	9091	2000aa	OTTHUMP00000041047	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS33312	-
SCN3A-002	OTTHUMT00000102656.2	6599	1951aa	OTTHUMP00000041048	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS46440	Q9NY46
SCN3A-010	OTTHUMT00000492664.1	8854	1979aa	OTTHUMP00000283987	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
SCN3A-004	OTTHUMT00000102658.4	4146	1364aa	OTTHUMP00000204827	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	E7EUE6	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
SCN3A-003	OTTHUMT00000102657.3	1216	200aa	OTTHUMP00000204826	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	C9JBM7	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
SCN3A-009	OTTHUMT00000491113.1	8825	1115aa	OTTHUMP00000282943	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-
SCN3A-011	OTTHUMT00000492663.1	8724	674aa	OTTHUMP00000283986	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-
SCN3A-007	OTTHUMT00000333384.1	531	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
SCN3A-006	OTTHUMT00000333383.1	555	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 28 Transcript length: 8,854 bps Translation length: 1,979 residues

Class

Novel protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 17/10/2016 (Created on 17/10/2016)

Alternative symbols

AC013463.1-010

Annotation Attributes

RNA-Seq supported only [Definitions]

Other assemblies

This transcript maps to 165,087,542-165,203,881 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000639244

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: SCN3A-010 OTTHUMT00000492664.1

Summary

Transcript-based displays