Transcript: ABCC1-007 OTTHUMT00000436390.2

Description

ATP-binding cassette, sub-family C (CFTR/MRP), member 1

Location

Chromosome 16: 16,009,856-16,141,525 forward strand.

About this transcript

This transcript has 30 exons and is annotated with 47 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000048267 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
ABCC1-001	OTTHUMT00000109701.1	6552	1531aa	OTTHUMP00000045904	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS42122	P33527
ABCC1-007	OTTHUMT00000436390.2	4565	1440aa	OTTHUMP00000256414	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	I3L4X2	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
ABCC1-008	OTTHUMT00000436389.1	5861	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
ABCC1-005	OTTHUMT00000436394.2	744	22aa	OTTHUMP00000258720	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
ABCC1-004	OTTHUMT00000436393.1	542	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
ABCC1-002	OTTHUMT00000436391.1	1543	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
ABCC1-003	OTTHUMT00000436392.1	1198	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
ABCC1-006	OTTHUMT00000436395.1	996	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 30 Transcript length: 4,565 bps Translation length: 1,440 residues

Class

Novel protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 28/02/2014 (Created on 12/10/2011)

Alternative symbols

AC025778.1-007

Remarks

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 16,009,856-16,141,525 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000572882

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: ABCC1-007 OTTHUMT00000436390.2

Summary

Transcript-based displays