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Description

ceroid-lipofuscinosis, neuronal 3

Location
About this transcript

This transcript has 8 exons and is annotated with 4 domains and features.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtFlags
CLN3-054OTTHUMT00000489717.13867438aaOTTHUMP00000282238
 
Protein coding
CCDS10632Q13286
CLN3-031OTTHUMT00000489689.33832438aaOTTHUMP00000282216
 
Protein coding
CCDS10632Q13286
CLN3-001OTTHUMT00000214115.31876438aaOTTHUMP00000122517
 
Protein coding
CCDS10632Q13286
CLN3-006OTTHUMT00000430940.21840414aaOTTHUMP00000254078
 
Protein coding
CCDS73855-
CLN3-007OTTHUMT00000430943.21720384aaOTTHUMP00000254080
 
Protein coding
CCDS73854B4DFF3
CLN3-038OTTHUMT00000489690.11608414aaOTTHUMP00000282217
 
Protein coding
CCDS73855-
CLN3-042OTTHUMT00000489692.21452384aaOTTHUMP00000282222
 
Protein coding
CCDS73854B4DFF3
CLN3-008OTTHUMT00000430942.11469339aaOTTHUMP00000254079
 
Protein coding
--
CLN3-009OTTHUMT00000430955.31430285aaOTTHUMP00000254088
 
Protein coding
-F6TI76
CLN3-020OTTHUMT00000430950.21318421aaOTTHUMP00000254086
 
Protein coding
--
CLN3-049OTTHUMT00000489712.11284370aaOTTHUMP00000282237
 
Protein coding
-A0A1B0GV71
CLN3-011OTTHUMT00000430947.21224336aaOTTHUMP00000254083
 
Protein coding
-O95086
CLN3-005OTTHUMT00000489680.11173390aaOTTHUMP00000282210
 
Protein coding
-A0A0A0MRC7
CLN3-045OTTHUMT00000489697.11084269aaOTTHUMP00000282224
 
Protein coding
-A0A1B0GV41 CDS 3' incomplete
CLN3-044OTTHUMT00000489700.2969228aaOTTHUMP00000282226
 
Protein coding
-H3BNK7 CDS 3' incomplete
CLN3-032OTTHUMT00000430956.275828aaOTTHUMP00000282221
 
Protein coding
--CDS 3' incomplete
CLN3-014OTTHUMT00000430962.3688167aaOTTHUMP00000254091
 
Protein coding
-O95090 CDS 3' incomplete
CLN3-030OTTHUMT00000430964.2650176aaOTTHUMP00000254092
 
Protein coding
-H3BR84 CDS 3' incomplete
CLN3-055OTTHUMT00000489726.1634176aaOTTHUMP00000282240
 
Protein coding
--CDS 3' incomplete
CLN3-027OTTHUMT00000430967.155774aaOTTHUMP00000254095
 
Protein coding
-H3BPL0 CDS 3' incomplete
CLN3-017OTTHUMT00000430966.21946182aaOTTHUMP00000254094
 
Nonsense mediated decay
-H3BNK7
CLN3-052OTTHUMT00000489719.11753363aaOTTHUMP00000282239
 
Nonsense mediated decay
-A0A1B0GW34
CLN3-003OTTHUMT00000430960.31606131aaOTTHUMP00000282211
 
Nonsense mediated decay
-Q9UP10
CLN3-012OTTHUMT00000430945.2157777aaOTTHUMP00000254082
 
Nonsense mediated decay
-B4DMY6
CLN3-037OTTHUMT00000489691.21536131aaOTTHUMP00000282218
 
Nonsense mediated decay
-Q9UP10
CLN3-023OTTHUMT00000430953.3140477aaOTTHUMP00000282220
 
Nonsense mediated decay
--
CLN3-022OTTHUMT00000430952.21228181aaOTTHUMP00000282219
 
Nonsense mediated decay
-Q9UBD8
CLN3-035OTTHUMT00000430954.11225181aaOTTHUMP00000254087
 
Nonsense mediated decay
-Q9UBD8
CLN3-010OTTHUMT00000430958.2118382aaOTTHUMP00000254089
 
Nonsense mediated decay
-A0A0D9SF04
CLN3-015OTTHUMT00000430959.21168181aaOTTHUMP00000254090
 
Nonsense mediated decay
-Q9UBD8
CLN3-019OTTHUMT00000430949.11109253aaOTTHUMP00000254085
 
Nonsense mediated decay
--
CLN3-018OTTHUMT00000430948.2931105aaOTTHUMP00000254084
 
Nonsense mediated decay
-Q9UBH5
CLN3-034OTTHUMT00000430939.2790218aaOTTHUMP00000254077
 
Nonsense mediated decay
-H3BMN4 CDS 5' incomplete
CLN3-043OTTHUMT00000489699.1769155aaOTTHUMP00000282225
 
Nonsense mediated decay
-H3BR00
CLN3-059OTTHUMT00000489727.176452aaOTTHUMP00000282241
 
Nonsense mediated decay
--
CLN3-036OTTHUMT00000489693.149553aaOTTHUMP00000282223
 
Nonsense mediated decay
-H3BUF8
CLN3-040OTTHUMT00000489694.1975No protein-
 
Processed transcript
--
CLN3-026OTTHUMT00000430971.1616No protein-
 
Processed transcript
--
CLN3-029OTTHUMT00000430968.1582No protein-
 
Processed transcript
--
CLN3-024OTTHUMT00000430972.1570No protein-
 
Processed transcript
--
CLN3-041OTTHUMT00000489695.1565No protein-
 
Processed transcript
--
CLN3-028OTTHUMT00000430970.1551No protein-
 
Processed transcript
--
CLN3-025OTTHUMT00000430969.1544No protein-
 
Processed transcript
--
CLN3-039OTTHUMT00000489696.1533No protein-
 
Processed transcript
--
CLN3-016OTTHUMT00000430963.1461No protein-
 
Processed transcript
--
CLN3-002OTTHUMT00000430941.13081No protein-
 
Retained intron
--
CLN3-062OTTHUMT00000489722.12969No protein-
 
Retained intron
--
CLN3-060OTTHUMT00000489724.12289No protein-
 
Retained intron
--
CLN3-051OTTHUMT00000489720.12018No protein-
 
Retained intron
--
CLN3-057OTTHUMT00000489716.11968No protein-
 
Retained intron
--
CLN3-061OTTHUMT00000489715.11957No protein-
 
Retained intron
--
CLN3-050OTTHUMT00000489723.11837No protein-
 
Retained intron
--
CLN3-047OTTHUMT00000489713.21684No protein-
 
Retained intron
--
CLN3-058OTTHUMT00000489718.11679No protein-
 
Retained intron
--
CLN3-021OTTHUMT00000430951.21616No protein-
 
Retained intron
--
CLN3-013OTTHUMT00000430961.21409No protein-
 
Retained intron
--
CLN3-056OTTHUMT00000489725.11326No protein-
 
Retained intron
--
CLN3-053OTTHUMT00000489721.11292No protein-
 
Retained intron
--
CLN3-004OTTHUMT00000430957.11159No protein-
 
Retained intron
--
CLN3-046OTTHUMT00000489698.11011No protein-
 
Retained intron
--
CLN3-048OTTHUMT00000489714.1801No protein-
 
Retained intron
--
CLN3-033OTTHUMT00000430946.1759No protein-
 
Retained intron
--
Statistics

Exons: 8 Transcript length: 634 bps Translation length: 176 residues

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 18/12/2015 (Created on 18/12/2015)

Alternative symbols

AC138894.4-055

Annotation Attributes

RNA-Seq supported only [Definitions]

Remarks

alternative 5' UTR

CDS end not found

mRNA end not found

Other assemblies

This transcript maps to 28,482,636-28,492,047 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts
Ensembl transcript having exact match with Havana:
Curation Method

Manual annotation from Havana

Transcript-based displays