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Summary
- Splice variants
- Transcript comparison
Sequence
Comparative Genomics
- Genomic alignments
- Orthologues
- Alt. alleles
Ontologies
Gene expression
External references
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Gene: Stx1a OTTMUSG00000016270

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Description

syntaxin 1A (brain)

Location

Chromosome 5: 135,023,482-135,051,100 forward strand.

About this gene

This gene has 6 transcripts (splice variants), 6 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Stx1a-001	OTTMUST00000039031.2	2162	288aa	OTTMUSP00000017437	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS19731	Q497P1
Stx1a-006	OTTMUST00000138207.2	550	158aa	OTTMUSP00000072689	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	A0A0J9YUA0	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Stx1a-003	OTTMUST00000039033.2	2167	256aa	OTTMUSP00000039024	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	D6RFB9
Stx1a-005	OTTMUST00000039035.1	655	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Stx1a-004	OTTMUST00000039034.1	594	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Stx1a-002	OTTMUST00000039032.1	2114	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

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Summary

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