Description
protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1
Location
Chromosome 7: 144,476,755-144,553,729 reverse strand.
About this gene
This gene has 12 transcripts (splice variants), 4 orthologues and 3 paralogues.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| Ppfia1-003 | OTTMUST00000113934.2 | 5181 | 1241aa | OTTMUSP00000063627 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS52464 | B2RXW8 | |
| Ppfia1-002 | OTTMUST00000113932.2 | 4829 | 1266aa | OTTMUSP00000063626 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS59738 | B2RXQ2 | |
| Ppfia1-001 | OTTMUST00000113931.1 | 5262 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| Ppfia1-004 | OTTMUST00000113936.1 | 3444 | 562aa | OTTMUSP00000063628 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | S4R1D4 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| Ppfia1-007 | OTTMUST00000113939.1 | 696 | 94aa | OTTMUSP00000063629 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | S4R1I7 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| Ppfia1-010 | OTTMUST00000113941.1 | 357 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| Ppfia1-006 | OTTMUST00000113938.1 | 4088 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| Ppfia1-011 | OTTMUST00000146726.1 | 2782 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| Ppfia1-005 | OTTMUST00000113937.1 | 2055 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| Ppfia1-008 | OTTMUST00000113943.1 | 928 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| Ppfia1-012 | OTTMUST00000146725.1 | 804 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| Ppfia1-009 | OTTMUST00000113942.1 | 405 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
