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Mus musculus

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chromosome 1 chromosome 2 chromosome 3 chromosome 4 chromosome 5 chromosome 6 chromosome 7 chromosome 8 chromosome 9 chromosome 10 chromosome 11 chromosome 12 chromosome 13 chromosome 14 chromosome 15 chromosome 16 chromosome 17 chromosome 18 chromosome 19 chromosome X chromosome Y Karyotype selector

The arrows () indicate the approximate positions of the Idd regions annotated in different strains.

Shading indicates the karyotype bands and unannotated regions.

This Release

Release Date 7 February 2017
Datafreeze Date 18 October 2016
As used in GENCODE M13; Ensembl 88 genebuild
Reference Assembly GRCm38
Reference Strain C57BL/6J
Annotation Method Manual Annotation

IDD Regions and Strains

Candidate Insulin dependent diabetes (Idd) regions on chromosomes 1, 3, 4, 6, 11 and 17 have been annotated in both the CL57BL/6J reference strain and one or more of NOD/MrkTac, NOD/ShiLtJ and 129 strains. Vega contains a comparative analysis of these regions in the different strains.

Comparative Analysis

Region Available species / haplotypes / strains Examples
MHC rat, dog, gorilla, chimpanzee, wallaby, pig (Duroc and Large White), mouse (ref. and 2 NOD strains), rat (mixed sex strain), human (ref. and 7 haplotypes) example
IDD mouse (ref. and NOD strains). example
Auto­some mouse chr 4 and human chr 1; mouse chr 11 and human chr 17 1/4 17/11
Allo­some X: mouse, human and pig example
Sample Region mouse chr 2, human chr 20 and approx 10Mbp of pig chr 17 example

About this species