Transcript: Smg6-003 OTTMUST00000013973.2

Description

Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)

Location

About this transcript

This transcript has 17 exons and is annotated with 7 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Smg6-001	OTTMUST00000013971.2	5848	1418aa	OTTMUSP00000006490	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS25039	P61406
Smg6-004	OTTMUST00000013974.7	714	238aa	OTTMUSP00000006491	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete
Smg6-003	OTTMUST00000013973.2	4078	356aa	OTTMUSP00000038052	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Smg6-006	OTTMUST00000013976.1	637	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Smg6-005	OTTMUST00000013975.1	487	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Smg6-002	OTTMUST00000013972.1	2200	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 17 Transcript length: 4,078 bps Translation length: 356 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 10/03/2012 (Created on 23/01/2004)

Alternative symbols

RP23-143A14.6-003

Remarks

novel transcript

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 74,930,520-75,164,448 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000130145

Curation Method

Manual annotation from Havana