Transcript: Smarcc1-001 OTTMUST00000049879.3

Description

SWI/SNF related matrix associated actin dependent regulator of chromatin subfamily c member 1

Location

Chromosome 9: 110,131,980-110,240,178 forward strand.

About this transcript

This transcript has 28 exons and is annotated with 32 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000021083 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Smarcc1-001	OTTMUST00000049879.3	5717	1104aa	OTTMUSP00000023185	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS23561	P97496
Smarcc1-003	OTTMUST00000049881.1	5773	1098aa	OTTMUSP00000023187	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	Q3UNN4
Smarcc1-002	OTTMUST00000049880.1	3538	1075aa	OTTMUSP00000023186	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
Smarcc1-004	OTTMUST00000049882.2	1949	485aa	OTTMUSP00000023188	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	Q3UZD0
Smarcc1-006	OTTMUST00000132003.2	412	49aa	OTTMUSP00000070460	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Smarcc1-008	OTTMUST00000135329.2	351	44aa	OTTMUSP00000071629	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Smarcc1-005	OTTMUST00000049883.2	3078	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Smarcc1-007	OTTMUST00000133096.1	1280	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Smarcc1-009	OTTMUST00000135471.1	998	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 28 Transcript length: 5,717 bps Translation length: 1,104 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS23561

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 3, last modified on 17/10/2014 (Created on 17/10/2006)

Alternative symbols

RP24-285I4.1-001

Other assemblies

This transcript maps to 110,131,980-110,240,178 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000088716

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Smarcc1-001 OTTMUST00000049879.3

Summary

Transcript-based displays