Transcript: Col28a1-005 OTTMUST00000151864.1

Description

collagen type XXVIII alpha 1

Location

About this transcript

This transcript has 4 exons and is annotated with 8 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Col28a1-001	OTTMUST00000054427.1	4230	1141aa	OTTMUSP00000025976	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS39424	Q2UY11
Col28a1-005	OTTMUST00000151864.1	749	234aa	OTTMUSP00000078729	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Col28a1-004	OTTMUST00000140396.1	3787	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
Col28a1-003	OTTMUST00000054429.1	214	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Col28a1-002	OTTMUST00000054428.1	708	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 4 Transcript length: 749 bps Translation length: 234 residues

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 23/03/2016 (Created on 23/03/2016)

Alternative symbols

RP23-126H2.1-005

Annotation Attributes

RNA-Seq supported only [Definitions]

Remarks

alternative 5' UTR

CDS end not found

mRNA end not found

Other assemblies

This transcript maps to 8,169,616-8,180,174 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000213284

Curation Method

Manual annotation from Havana