Transcript: Svopl-002 OTTMUST00000095159.2

Description

SV2 related protein homolog (rat)-like

Location

About this transcript

This transcript has 11 exons and is annotated with 3 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Svopl-001	OTTMUST00000060660.2	2366	494aa	OTTMUSP00000029611	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS20009	Q6PDF3
Svopl-002	OTTMUST00000095159.2	1086	29aa	OTTMUSP00000053062	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Svopl-005	OTTMUST00000139014.1	3492	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Svopl-004	OTTMUST00000060659.2	2930	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Svopl-003	OTTMUST00000095160.1	760	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 11 Transcript length: 1,086 bps Translation length: 29 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 31/07/2012 (Created on 12/10/2010)

Alternative symbols

RP23-367E20.3-002

Annotation Attributes

not organism-supported [Definitions]

Remarks

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 37,984,512-38,031,089 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000172585

Curation Method

Manual annotation from Havana