Transcript: Vangl1-006 OTTMUST00000077009.2

Description

vang-like 1 (van gogh, Drosophila)

Location

Chromosome 3: 102,158,180-102,166,930 reverse strand.

About this transcript

This transcript has 5 exons and is annotated with 5 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000031053 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Vangl1-001	OTTMUST00000076931.3	6531	526aa	OTTMUSP00000040562	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS17686	Q80Z96
Vangl1-006	OTTMUST00000077009.2	818	253aa	OTTMUSP00000040612	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	F7BWJ0	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Vangl1-004	OTTMUST00000077007.2	592	137aa	OTTMUSP00000040611	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	E0CX72	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Vangl1-003	OTTMUST00000077006.4	341	10aa	OTTMUSP00000043318	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	A0A140T8S8	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Vangl1-002	OTTMUST00000077005.2	1743	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
Vangl1-005	OTTMUST00000077008.1	472	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Vangl1-007	OTTMUST00000081087.1	617	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 5 Transcript length: 818 bps Translation length: 253 residues

Class

Novel protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 10/03/2012 (Created on 28/01/2008)

Alternative symbols

AC159255.1-006

Remarks

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 102,158,180-102,166,930 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000161021

Curation Method

Manual annotation from Havana

Select a species

Recent locations

Transcript: Vangl1-006 OTTMUST00000077009.2

Summary

Transcript-based displays