Transcript: Nphs1-001 OTTMUST00000076995.2

Description

nephrosis 1 homolog, nephrin (human)

Location

About this transcript

This transcript has 30 exons and is annotated with 63 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Nphs1-001	OTTMUST00000076995.2	4608	1256aa	OTTMUSP00000040603	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS39884	Q9QZS7
Nphs1-007	OTTMUST00000145715.1	3877	1242aa	OTTMUSP00000075916	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
Nphs1-002	OTTMUST00000077111.1	4395	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
Nphs1-004	OTTMUST00000077113.1	752	72aa	OTTMUSP00000040696	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Nphs1-006	OTTMUST00000077115.2	1987	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Nphs1-005	OTTMUST00000077114.1	664	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 30 Transcript length: 4,608 bps Translation length: 1,256 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS39884

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 10/09/2015 (Created on 28/01/2008)

Alternative symbols

AC167970.7-001

Remarks

NP_062332.2

Other assemblies

This transcript maps to 30,459,725-30,487,223 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000006825

Curation Method

Manual annotation from Havana