Transcript: Casp4-007 OTTMUST00000085227.1

Description

caspase 4, apoptosis-related cysteine peptidase

Location

Chromosome 9: 5,321,399-5,336,089 forward strand.

About this transcript

This transcript has 6 exons.

Gene

This transcript is a product of gene OTTMUSG00000033830 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Casp4-001	OTTMUST00000085221.1	1435	373aa	OTTMUSP00000046015	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS22799	P70343
Casp4-004	OTTMUST00000085224.2	361	93aa	OTTMUSP00000046017	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Casp4-003	OTTMUST00000085223.1	1901	118aa	OTTMUSP00000046016	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-
Casp4-007	OTTMUST00000085227.1	871	69aa	OTTMUSP00000046018	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Casp4-002	OTTMUST00000085222.1	1614	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Casp4-006	OTTMUST00000085226.1	752	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Casp4-005	OTTMUST00000085225.1	365	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 6 Transcript length: 871 bps Translation length: 69 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 10/03/2012 (Created on 07/11/2008)

Alternative symbols

RP23-424D5.1-007

Remarks

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 5,321,399-5,336,089 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000159461

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Casp4-007 OTTMUST00000085227.1

Summary

Transcript-based displays