Transcript: Slf1-001 OTTMUST00000085507.3

Description

SMC5-SMC6 complex localization factor 1

Location

Chromosome 13: 77,043,088-77,135,473 reverse strand.

About this transcript

This transcript has 21 exons and is annotated with 24 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000033900 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Slf1-001	OTTMUST00000085507.3	3747	1054aa	OTTMUSP00000046193	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS26657	Q8R3P9
Slf1-004	OTTMUST00000086866.2	1454	266aa	OTTMUSP00000047080	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	A0A0M3HEQ6	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Slf1-006	OTTMUST00000086868.1	900	289aa	OTTMUSP00000047081	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	E0CX75	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Slf1-002	OTTMUST00000086864.2	1774	175aa	OTTMUSP00000047083	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	Q8C211
Slf1-007	OTTMUST00000086869.1	1095	175aa	OTTMUSP00000047082	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	Q8C211
Slf1-003	OTTMUST00000086865.1	1241	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Slf1-005	OTTMUST00000086867.1	531	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 21 Transcript length: 3,747 bps Translation length: 1,054 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS26657

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 3, last modified on 18/06/2013 (Created on 26/11/2008)

Alternative symbols

RP23-231B13.2-001

Other assemblies

This transcript maps to 77,043,088-77,135,473 in GRCm38 (Ensembl) coordinates.

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Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000151524

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Slf1-001 OTTMUST00000085507.3

Summary

Transcript-based displays