Transcript: Pif1-004 OTTMUST00000086306.1

Description

PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)

Location

Chromosome 9: 65,587,221-65,595,967 forward strand.

About this transcript

This transcript has 13 exons and is annotated with 12 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000034117 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Pif1-001	OTTMUST00000086303.1	3685	650aa	OTTMUSP00000046714	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS23295	Q80SX8
Pif1-002	OTTMUST00000086304.1	3395	650aa	OTTMUSP00000046715	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS23295	Q80SX8
Pif1-004	OTTMUST00000086306.1	3309	650aa	OTTMUSP00000046717	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS23295	Q80SX8
Pif1-007	OTTMUST00000086309.3	742	157aa	OTTMUSP00000046718	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Pif1-008	OTTMUST00000086310.2	371	9aa	OTTMUSP00000046719	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Pif1-003	OTTMUST00000086305.1	3725	411aa	OTTMUSP00000046716	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	D6RFC6
Pif1-005	OTTMUST00000086307.1	3897	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Pif1-006	OTTMUST00000086308.1	2450	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 13 Transcript length: 3,309 bps Translation length: 650 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS23295

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 02/10/2013 (Created on 28/01/2009)

Alternative symbols

RP24-538P2.1-004

Remarks

alternative 5' UTR

Other assemblies

This transcript maps to 65,587,221-65,595,967 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000131483

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Pif1-004 OTTMUST00000086306.1

Summary

Transcript-based displays