Transcript: Sspo-006 OTTMUST00000126776.2

Description

SCO-spondin

Location

About this transcript

This transcript has 4 exons and is annotated with 10 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Sspo-001	OTTMUST00000126915.2	15571	5144aa	OTTMUSP00000068597	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS57420	-
Sspo-008	OTTMUST00000151629.1	15408	5135aa	OTTMUSP00000078619	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
Sspo-006	OTTMUST00000126776.2	537	179aa	OTTMUSP00000068539	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete
Sspo-007	OTTMUST00000126914.1	15128	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
Sspo-005	OTTMUST00000126775.1	3632	933aa	OTTMUSP00000068538	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	A0A087WNT4	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Sspo-004	OTTMUST00000119171.2	2235	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 4 Transcript length: 537 bps Translation length: 179 residues

Class

Novel protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 10/07/2015 (Created on 14/04/2014)

Alternative symbols

RP23-205F19.3-006

Remarks

CDS start not found

CDS end not found

mRNA start not found

mRNA end not found

Other assemblies

This transcript maps to 48,493,780-48,496,206 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000188970

Curation Method

Manual annotation from Havana