Transcript: Sspo-008 OTTMUST00000151629.1

Description

SCO-spondin

Location

About this transcript

This transcript has 103 exons and is annotated with 299 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Sspo-001	OTTMUST00000126915.2	15571	5144aa	OTTMUSP00000068597	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS57420	-
Sspo-008	OTTMUST00000151629.1	15408	5135aa	OTTMUSP00000078619	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
Sspo-006	OTTMUST00000126776.2	537	179aa	OTTMUSP00000068539	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete
Sspo-007	OTTMUST00000126914.1	15128	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
Sspo-005	OTTMUST00000126775.1	3632	933aa	OTTMUSP00000068538	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	A0A087WNT4	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Sspo-004	OTTMUST00000119171.2	2235	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 103 Transcript length: 15,408 bps Translation length: 5,135 residues

Class

Novel protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 15/03/2016 (Created on 15/03/2016)

Alternative symbols

RP23-205F19.3-008

Annotation Attributes

RNA-Seq supported only [Definitions]

Other assemblies

This transcript maps to 48,448,229-48,501,099 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000212740

Curation Method

Manual annotation from Havana