Transcript: Ppfia4-007 OTTMUST00000126548.1

Description

protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4

Location

Chromosome 1: 134,296,784-134,327,266 reverse strand.

About this transcript

This transcript has 22 exons and is annotated with 29 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000049678 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Ppfia4-001	OTTMUST00000126547.1	6067	1187aa	OTTMUSP00000068415	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS48369	B8QI36
Ppfia4-003	OTTMUST00000126552.1	5238	1184aa	OTTMUSP00000068417	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	A0A087WPM2
Ppfia4-007	OTTMUST00000126548.1	4674	892aa	OTTMUSP00000068416	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	A0A087WPJ3	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Ppfia4-002	OTTMUST00000126549.1	5418	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
Ppfia4-004	OTTMUST00000126550.1	2955	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Ppfia4-005	OTTMUST00000126551.1	2985	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Ppfia4-006	OTTMUST00000126553.1	1215	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 22 Transcript length: 4,674 bps Translation length: 892 residues

Class

Novel protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 04/04/2014 (Created on 04/04/2014)

Alternative symbols

RP24-343C13.2-007

Remarks

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 134,296,784-134,327,266 in GRCm38 (Ensembl) coordinates.

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Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000186730

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Ppfia4-007 OTTMUST00000126548.1

Summary

Transcript-based displays