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Gene3D

Gene3D analysis as of interpro_scan.pl
HAMAP

HAMAP is a system, based on manual protein annotation, that identifies and semi-automatically annotates proteins that are part of well-conserved families or subfamilies: the HAMAP families.
PIRSF domain

Protein domains and motifs from the PIR (Protein Information Resource) Superfamily database.
PROSITE patterns

Protein domains and motifs from the PROSITE profiles database are aligned to the genome.
PROSITE profiles

Protein domains and motifs from the PROSITE profiles database are aligned to the genome.
Pfam domain

Protein domains and motifs in the Pfam database.
Prints domain

Protein fingerprints (groups of conserved motifs) are aligned to the genome. These motifs come from the PRINTS database.
SMART domains

Protein domains and motifs in the SMART database.
Superfamily domains

Protein domains and motifs in the SUPERFAMILY database.
TIGRFAM domain

Protein domains and motifs in the TIGRFAM database.
blastprodom

NCBI-BlastP search against ProDom families
hmmpanther

HMM-Panther families

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