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Sequence and assembly

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  • Contigs
    Track showing underlying assembly contigs.
  • Sequence
    Track showing sequence in both directions. Only displayed at 1Kb and below.
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      Transcript features

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        Genes and transcripts

        Genes

        • Havana
          Manual annotation from Havana
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          mRNA and protein alignments

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          • Vertebrate cDNAs (ENA)
            Positions of vertebrate mRNAs along the genome. mRNAs are from the European Nucleotide Archive database. Initial alignments are performed using TBLASTN of Genscan-predicted peptides against the European Nucleotide Archive mRNAs.
          • Zebrafish cDNAs (RefSeq)
            Zebrafish cDNAs from NCBI RefSeq are aligned to the genome using GeneWise.
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              Repeat regions

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                Information and decorations

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                • %GC
                  Shows percentage of Gs & Cs in region
                • Annotation status
                  Unannotated regions
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                  Shows the scalebar
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                  Shows the length of the region being displayed
                • Alignment Difference Legend
                • Gene Legend
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                • Disabled track summary
                  Show counts of number of tracks turned off by the user
                • Information
                  Details of the region shown in the image
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