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Sequence and assembly

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    Track showing underlying assembly contigs.
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    Track showing sequence in both directions. Only displayed at 1Kb and below.
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        Genes and transcripts

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        • Havana
          Manual annotation from Havana
        • LoF
          Transcripts annotated with the functional effects of Loss-of-function (LoF) variants identified in the 1000 Genomes Pilot Projects
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          mRNA and protein alignments

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          • Human cDNAs (RefSeq)
            Human cDNAs from NCBI RefSeq are aligned to the genome using GeneWise.
          • Vertebrate cDNAs (ENA)
            Positions of vertebrate mRNAs along the genome. mRNAs are from the European Nucleotide Archive database. Initial alignments are performed using TBLASTN of Genscan-predicted peptides against the European Nucleotide Archive mRNAs.
          • Vertebrate non-coding cDNAs (ENA)
            Genomic positions of non-coding vertebrate mRNAs, annotated by the Anacode team at the Wellcome Trust Sanger Institute and used in Havana manual curation as supporting evidence for exons. Each repeat-masked clone (not an entire chromosome) is searched against non-coding RNA molecules of type "Other RNA" from the European Nucleotide Archive database using NCBI BLAST. Since each clone is searched, there will be edge effects where clones overlap in the chromosome assembly.
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              Comparative genomics

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                  Information and decorations

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                  • %GC
                    Shows percentage of Gs & Cs in region
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                    Cytogenetic bands
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