Description
syndecan binding protein (syntenin)
Synonyms
MDA-9, SYCL
Location
Chromosome 8: 58,552,924-58,582,860 forward strand.
VEGA68:CM000670.2
About this gene
This gene has 13 transcripts (splice variants), 2 orthologues and 1 paralogue.
Transcripts
Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
---|---|---|---|---|---|---|---|---|
SDCBP-005 | OTTHUMT00000378197.1 | 3589 | 318aa | OTTHUMP00000226416 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS83298 | G5EA09 | |
SDCBP-001 | OTTHUMT00000378193.1 | 2167 | 298aa | OTTHUMP00000226412 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS6172 | A0A024R7Z5 | |
SDCBP-003 | OTTHUMT00000378194.1 | 2103 | 297aa | OTTHUMP00000226413 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS47862 | - | |
SDCBP-002 | OTTHUMT00000378195.1 | 2086 | 298aa | OTTHUMP00000226414 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS6172 | A0A024R7Z5 | |
SDCBP-004 | OTTHUMT00000378196.1 | 1277 | 292aa | OTTHUMP00000226415 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS47863 | - | |
SDCBP-006 | OTTHUMT00000378198.1 | 1097 | 239aa | OTTHUMP00000226417 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | B4DHN5 | |
SDCBP-012 | OTTHUMT00000378201.1 | 772 | 244aa | OTTHUMP00000226418 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | E9PBU7 | |
SDCBP-007 | OTTHUMT00000378199.1 | 1372 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
SDCBP-008 | OTTHUMT00000378192.1 | 556 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
SDCBP-013 | OTTHUMT00000380055.1 | 812 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
SDCBP-010 | OTTHUMT00000378200.1 | 764 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
SDCBP-009 | OTTHUMT00000378202.1 | 564 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
SDCBP-011 | OTTHUMT00000378203.1 | 543 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |