Description
synaptophysin
Synonyms
MRX96
Location
Chromosome X: 49,187,804-49,200,259 reverse strand.
VEGA68:CM000685.2
About this gene
This gene has 9 transcripts (splice variants), 6 orthologues and 3 paralogues.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| SYP-001 | OTTHUMT00000083625.5 | 2498 | 313aa | OTTHUMP00000032504 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS14321 | P08247 | |
| SYP-004 | OTTHUMT00000357748.2 | 1850 | 313aa | OTTHUMP00000216753 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS14321 | P08247 | |
| SYP-002 | OTTHUMT00000083626.2 | 761 | 203aa | OTTHUMP00000216756 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | H7C4W3 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SYP-006 | OTTHUMT00000357750.1 | 874 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| SYP-003 | OTTHUMT00000083627.2 | 858 | 40aa | OTTHUMP00000216757 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | G5E9A2 | |
| SYP-009 | OTTHUMT00000357753.1 | 581 | 118aa | OTTHUMP00000216755 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | F2Z3E1 | |
| SYP-008 | OTTHUMT00000357752.1 | 513 | 118aa | OTTHUMP00000216754 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | F2Z3E1 | |
| SYP-005 | OTTHUMT00000357749.2 | 2062 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SYP-007 | OTTHUMT00000357751.1 | 574 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
