Description
Treacher Collins-Franceschetti syndrome 1
Synonyms
TCS, treacle
Location
Chromosome 5: 150,357,666-150,400,308 forward strand.
VEGA68:CM000667.2
About this gene
This gene has 15 transcripts (splice variants).
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| TCOF1-001 | OTTHUMT00000252374.2 | 4832 | 1411aa | OTTHUMP00000160560 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS4306 | - | |
| TCOF1-003 | OTTHUMT00000373675.2 | 4825 | 1412aa | OTTHUMP00000224042 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS47306 | - | |
| TCOF1-002 | OTTHUMT00000373674.2 | 4644 | 1451aa | OTTHUMP00000224041 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS47305 | - | |
| TCOF1-014 | OTTHUMT00000380552.2 | 4467 | 1488aa | OTTHUMP00000227678 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS54936 | Q13428 | |
| TCOF1-004 | OTTHUMT00000373676.1 | 3400 | 958aa | OTTHUMP00000224043 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS47307 | - | |
| TCOF1-008 | OTTHUMT00000373744.1 | 4646 | 1488aa | OTTHUMP00000224077 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | E7ETY2 | |
| TCOF1-015 | OTTHUMT00000387324.2 | 4272 | 1414aa | OTTHUMP00000231643 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | J3KQ96 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| TCOF1-010 | OTTHUMT00000373746.1 | 701 | 67aa | OTTHUMP00000224078 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| TCOF1-011 | OTTHUMT00000373747.1 | 661 | 188aa | OTTHUMP00000224079 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| TCOF1-005 | OTTHUMT00000373677.2 | 2532 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| TCOF1-012 | OTTHUMT00000373755.1 | 869 | 148aa | OTTHUMP00000224083 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| TCOF1-009 | OTTHUMT00000373745.1 | 526 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| TCOF1-006 | OTTHUMT00000373678.2 | 5240 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| TCOF1-007 | OTTHUMT00000373679.2 | 5195 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| TCOF1-013 | OTTHUMT00000373756.1 | 897 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
