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Summary
- Splice variants
- Transcript comparison
Sequence
Comparative Genomics
- Genomic alignments (2)
- Orthologues (12)
- Alt. alleles
Ontologies
Gene expression
External references
Supporting evidence
Other genome browsers
- Ensembl

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Gene: SLC6A4 OTTHUMG00000132751

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Description

solute carrier family 6 (neurotransmitter transporter, serotonin), member 4

Synonyms

SERT1, 5-HTT

Location

Chromosome 17: 30,194,319-30,236,002 reverse strand.

VEGA68:CM000679.2

About this gene

This gene has 4 transcripts (splice variants), 12 orthologues and 11 paralogues.

Transcripts

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Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
SLC6A4-002	OTTHUMT00000256115.3	6543	630aa	OTTHUMP00000163633	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS11256	P31645
SLC6A4-001	OTTHUMT00000256114.4	2160	618aa	OTTHUMP00000163632	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	J3KPR9	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
SLC6A4-003	OTTHUMT00000447936.1	1069	72aa	OTTHUMP00000262233	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	J3QKP3	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
SLC6A4-004	OTTHUMT00000447937.1	566	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

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Summary

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Gene-based displays