Description
collagen, type XI, alpha 1
Synonyms
STL2, CO11A1
Location
Chromosome 1: 102,876,467-103,108,491 reverse strand.
VEGA68:CM000663.2
About this gene
This gene has 10 transcripts (splice variants), 11 orthologues and 8 paralogues.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| COL11A1-001 | OTTHUMT00000029997.1 | 7286 | 1806aa | OTTHUMP00000012567 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS778 | P12107 | |
| COL11A1-008 | OTTHUMT00000360666.2 | 5442 | 1690aa | OTTHUMP00000218241 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS780 | - | |
| COL11A1-002 | OTTHUMT00000029998.2 | 1709 | 569aa | OTTHUMP00000012568 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| COL11A1-003 | OTTHUMT00000029999.2 | 776 | 200aa | OTTHUMP00000196048 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| COL11A1-009 | OTTHUMT00000488038.1 | 5289 | 694aa | OTTHUMP00000281196 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| COL11A1-010 | OTTHUMT00000491489.1 | 1113 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| COL11A1-004 | OTTHUMT00000030000.2 | 678 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| COL11A1-005 | OTTHUMT00000030001.2 | 377 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| COL11A1-007 | OTTHUMT00000030087.1 | 785 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| COL11A1-006 | OTTHUMT00000030086.1 | 297 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
