Description
sodium channel, voltage-gated, type I, alpha subunit
Synonyms
HBSCI, Nav1.1, NAC1, SMEI, GEFSP2
Location
Chromosome 2: 165,989,160-166,149,214 reverse strand.
VEGA68:CM000664.2
About this gene
This gene has 18 transcripts (splice variants).
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| SCN1A-011 | OTTHUMT00000490178.1 | 8562 | 1998aa | OTTHUMP00000282545 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS33316 | - | |
| SCN1A-001 | OTTHUMT00000102661.5 | 8533 | 2009aa | OTTHUMP00000041051 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS54413 | P35498 | |
| SCN1A-017 | OTTHUMT00000490186.2 | 8299 | 1998aa | OTTHUMP00000282552 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS33316 | - | |
| SCN1A-002 | OTTHUMT00000102662.3 | 8097 | 1998aa | OTTHUMP00000041052 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS33316 | - | |
| SCN1A-003 | OTTHUMT00000333750.4 | 5946 | 1981aa | OTTHUMP00000205012 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS54414 | - | |
| SCN1A-015 | OTTHUMT00000490183.1 | 10107 | 1618aa | OTTHUMP00000282549 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | A0A1B0GVX7 | |
| SCN1A-018 | OTTHUMT00000491107.1 | 8131 | 1998aa | OTTHUMP00000282940 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | |
| SCN1A-012 | OTTHUMT00000490179.1 | 100 | 3aa | OTTHUMP00000282546 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SCN1A-013 | OTTHUMT00000490184.1 | 8508 | 829aa | OTTHUMP00000282550 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | A0A1B0GUX7 | |
| SCN1A-009 | OTTHUMT00000490137.1 | 4268 | 331aa | OTTHUMP00000282519 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | A0A1B0GUN7 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SCN1A-010 | OTTHUMT00000490138.1 | 3606 | 145aa | OTTHUMP00000282520 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| SCN1A-014 | OTTHUMT00000490185.1 | 168 | 30aa | OTTHUMP00000282551 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SCN1A-008 | OTTHUMT00000481551.1 | 139 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SCN1A-016 | OTTHUMT00000490187.1 | 4614 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SCN1A-007 | OTTHUMT00000470907.2 | 711 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SCN1A-006 | OTTHUMT00000481550.1 | 560 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SCN1A-005 | OTTHUMT00000333752.2 | 544 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SCN1A-004 | OTTHUMT00000333751.1 | 542 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
