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Summary
- Splice variants
- Transcript comparison
Sequence
Comparative Genomics
- Genomic alignments
- Orthologues
- Alt. alleles
Ontologies
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Gene: COL6A1 OTTHUMG00000090440

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Description

collagen, type VI, alpha 1

Location

Chromosome 21: 45,981,737-46,005,050 forward strand.

VEGA68:CM000683.2

About this gene

This gene has 6 transcripts (splice variants), 20 orthologues and 19 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
COL6A1-001	OTTHUMT00000206877.1	4238	1028aa	OTTHUMP00000115501	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS13727	P12109
COL6A1-002	OTTHUMT00000206878.1	2358	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
COL6A1-003	OTTHUMT00000206879.1	968	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
COL6A1-006	OTTHUMT00000206882.1	863	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
COL6A1-005	OTTHUMT00000206881.1	500	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
COL6A1-004	OTTHUMT00000206880.1	435	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

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Summary

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