Description
nucleoporin 88kDa
Synonyms
MGC8530
Location
Chromosome 17: 5,360,963-5,420,160 reverse strand.
VEGA68:CM000679.2
About this gene
This gene has 14 transcripts (splice variants) and 2 orthologues.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| NUP88-001 | OTTHUMT00000216918.3 | 2916 | 741aa | OTTHUMP00000125305 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS11070 | Q99567 | |
| NUP88-004 | OTTHUMT00000439357.1 | 2194 | 696aa | OTTHUMP00000257850 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| NUP88-006 | OTTHUMT00000439365.2 | 771 | 153aa | OTTHUMP00000257851 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| NUP88-003 | OTTHUMT00000439358.1 | 2244 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| NUP88-010 | OTTHUMT00000439356.1 | 800 | 110aa | OTTHUMP00000257849 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| NUP88-005 | OTTHUMT00000439366.1 | 615 | 128aa | OTTHUMP00000257852 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| NUP88-014 | OTTHUMT00000439355.1 | 1195 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| NUP88-009 | OTTHUMT00000439367.1 | 580 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| NUP88-002 | OTTHUMT00000439363.1 | 2081 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| NUP88-013 | OTTHUMT00000439361.1 | 788 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| NUP88-008 | OTTHUMT00000439362.1 | 599 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| NUP88-011 | OTTHUMT00000439360.1 | 548 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| NUP88-012 | OTTHUMT00000439359.1 | 434 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| NUP88-007 | OTTHUMT00000439364.1 | 361 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
