Description
RNA polymerase II associated protein 1
Synonyms
DKFZP727M111, MGC858, KIAA1403, FLJ12732
Location
Chromosome 15: 41,517,176-41,544,271 reverse strand.
VEGA68:CM000677.2
About this gene
This gene has 14 transcripts (splice variants) and 1 orthologue.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| RPAP1-001 | OTTHUMT00000252694.2 | 4665 | 1393aa | OTTHUMP00000160862 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS10079 | Q9BWH6 | |
| RPAP1-004 | OTTHUMT00000420208.1 | 3906 | 1128aa | OTTHUMP00000249212 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | |
| RPAP1-010 | OTTHUMT00000420218.1 | 955 | 180aa | OTTHUMP00000249216 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| RPAP1-012 | OTTHUMT00000420214.2 | 601 | 200aa | OTTHUMP00000249215 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | H3BTJ6 | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete |
| RPAP1-008 | OTTHUMT00000420219.2 | 545 | 128aa | OTTHUMP00000249217 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| RPAP1-002 | OTTHUMT00000420210.1 | 2901 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| RPAP1-003 | OTTHUMT00000420212.1 | 905 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| RPAP1-005 | OTTHUMT00000420209.1 | 5897 | 1315aa | OTTHUMP00000249213 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| RPAP1-015 | OTTHUMT00000420216.1 | 586 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| RPAP1-006 | OTTHUMT00000420207.1 | 1712 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| RPAP1-014 | OTTHUMT00000420213.1 | 639 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| RPAP1-009 | OTTHUMT00000420220.1 | 597 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| RPAP1-011 | OTTHUMT00000420217.1 | 499 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| RPAP1-013 | OTTHUMT00000420215.1 | 401 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
