Description
spindle apparatus coiled-coil protein 1
Synonyms
hSpindly, FLJ20364
Location
Chromosome 5: 169,583,634-169,604,778 forward strand.
VEGA68:CM000667.2
About this gene
This gene has 17 transcripts (splice variants) and 1 orthologue.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| SPDL1-001 | OTTHUMT00000252829.2 | 2668 | 605aa | OTTHUMP00000160995 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS4370 | Q96EA4 | |
| SPDL1-017 | OTTHUMT00000371640.3 | 936 | 312aa | OTTHUMP00000225276 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete |
| SPDL1-011 | OTTHUMT00000371634.2 | 896 | 230aa | OTTHUMP00000223160 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SPDL1-007 | OTTHUMT00000371624.3 | 711 | 86aa | OTTHUMP00000223152 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SPDL1-014 | OTTHUMT00000371637.2 | 637 | 158aa | OTTHUMP00000223163 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SPDL1-009 | OTTHUMT00000371626.3 | 623 | 149aa | OTTHUMP00000223154 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SPDL1-008 | OTTHUMT00000371625.2 | 552 | 88aa | OTTHUMP00000223153 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SPDL1-002 | OTTHUMT00000371619.1 | 2144 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| SPDL1-006 | OTTHUMT00000371623.1 | 1927 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| SPDL1-004 | OTTHUMT00000371621.3 | 2144 | 44aa | OTTHUMP00000223150 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| SPDL1-013 | OTTHUMT00000371636.1 | 667 | 60aa | OTTHUMP00000223162 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| SPDL1-012 | OTTHUMT00000371635.1 | 559 | 60aa | OTTHUMP00000223161 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| SPDL1-016 | OTTHUMT00000371639.2 | 369 | 22aa | OTTHUMP00000223164 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SPDL1-003 | OTTHUMT00000371620.1 | 1617 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SPDL1-010 | OTTHUMT00000371627.1 | 565 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SPDL1-018 | OTTHUMT00000376200.1 | 489 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SPDL1-015 | OTTHUMT00000371638.1 | 564 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
