Description
splicing factor 3b, subunit 3, 130kDa
Synonyms
RSE1, SAP130, KIAA0017, SF3b130
Location
Chromosome 16: 70,523,788-70,577,670 forward strand.
VEGA68:CM000678.2
About this gene
This gene has 16 transcripts (splice variants) and 1 orthologue.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| SF3B3-001 | OTTHUMT00000268972.2 | 9720 | 1217aa | OTTHUMP00000174907 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS10894 | Q15393 | |
| SF3B3-004 | OTTHUMT00000434912.2 | 551 | 4aa | OTTHUMP00000257069 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SF3B3-018 | OTTHUMT00000437758.1 | 529 | 72aa | OTTHUMP00000257068 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SF3B3-003 | OTTHUMT00000434909.2 | 453 | 30aa | OTTHUMP00000255651 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SF3B3-006 | OTTHUMT00000434911.2 | 334 | 57aa | OTTHUMP00000259261 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SF3B3-005 | OTTHUMT00000434913.2 | 333 | 31aa | OTTHUMP00000259262 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SF3B3-002 | OTTHUMT00000434910.1 | 1159 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| SF3B3-007 | OTTHUMT00000434914.3 | 630 | 91aa | OTTHUMP00000259263 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SF3B3-020 | OTTHUMT00000434923.2 | 401 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SF3B3-010 | OTTHUMT00000434918.1 | 1105 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SF3B3-008 | OTTHUMT00000434915.1 | 1084 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SF3B3-009 | OTTHUMT00000434916.2 | 1067 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SF3B3-014 | OTTHUMT00000434922.3 | 967 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SF3B3-011 | OTTHUMT00000434919.1 | 881 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SF3B3-016 | OTTHUMT00000437759.1 | 575 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SF3B3-012 | OTTHUMT00000434917.1 | 555 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
