Description
high-mobility group 20B
Synonyms
SMARCE1r, BRAF25, HMGX2, SOXL, BRAF35, HMGXB2
Location
Chromosome 19: 3,572,777-3,579,088 forward strand.
VEGA68:CM000681.2
About this gene
This gene has 18 transcripts (splice variants).
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| HMG20B-001 | OTTHUMT00000318088.1 | 1596 | 317aa | OTTHUMP00000197361 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS45919 | Q9P0W2 | |
| HMG20B-011 | OTTHUMT00000318098.1 | 886 | 286aa | OTTHUMP00000197364 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | B5MDG7 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| HMG20B-007 | OTTHUMT00000318094.2 | 759 | 142aa | OTTHUMP00000197363 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| HMG20B-018 | OTTHUMT00000458319.1 | 741 | 184aa | OTTHUMP00000267904 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | K7EJR8 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| HMG20B-005 | OTTHUMT00000318092.2 | 711 | 215aa | OTTHUMP00000197362 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | C9J8X5 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| HMG20B-013 | OTTHUMT00000318100.2 | 561 | 165aa | OTTHUMP00000197366 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| HMG20B-015 | OTTHUMT00000384574.1 | 1475 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| HMG20B-016 | OTTHUMT00000453026.1 | 526 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| HMG20B-012 | OTTHUMT00000318099.1 | 616 | 125aa | OTTHUMP00000197365 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| HMG20B-017 | OTTHUMT00000453044.1 | 363 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| HMG20B-002 | OTTHUMT00000318089.2 | 2434 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| HMG20B-003 | OTTHUMT00000318090.1 | 1242 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| HMG20B-009 | OTTHUMT00000318096.1 | 881 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| HMG20B-010 | OTTHUMT00000318097.1 | 852 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| HMG20B-006 | OTTHUMT00000318093.1 | 806 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| HMG20B-004 | OTTHUMT00000318091.1 | 719 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| HMG20B-014 | OTTHUMT00000318101.1 | 687 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| HMG20B-008 | OTTHUMT00000318095.1 | 580 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
