Description
nucleoporin 50kDa
Location
Chromosome 22: 45,163,841-45,188,015 forward strand.
VEGA68:CM000684.2
About this gene
This gene has 19 transcripts (splice variants) and 1 orthologue.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| NUP50-001 | OTTHUMT00000321993.2 | 5233 | 468aa | OTTHUMP00000199529 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS14062 | A0A024R4X7 | |
| NUP50-002 | OTTHUMT00000321994.2 | 2059 | 440aa | OTTHUMP00000199530 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS14063 | - | |
| NUP50-003 | OTTHUMT00000321995.1 | 1895 | 440aa | OTTHUMP00000199531 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS14063 | - | |
| NUP50-007 | OTTHUMT00000321999.3 | 584 | 8aa | OTTHUMP00000199533 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| NUP50-005 | OTTHUMT00000321997.2 | 579 | 45aa | OTTHUMP00000199532 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | X6RKQ2 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| NUP50-013 | OTTHUMT00000322005.2 | 551 | 4aa | OTTHUMP00000199537 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| NUP50-017 | OTTHUMT00000322009.2 | 543 | 178aa | OTTHUMP00000199539 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | B0QY21 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| NUP50-010 | OTTHUMT00000322002.2 | 537 | 76aa | OTTHUMP00000199535 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | B1AHA5 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| NUP50-011 | OTTHUMT00000322003.2 | 443 | 10aa | OTTHUMP00000199536 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| NUP50-016 | OTTHUMT00000322008.1 | 1018 | 30aa | OTTHUMP00000199538 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | F2Z3L9 | |
| NUP50-009 | OTTHUMT00000322001.1 | 763 | 30aa | OTTHUMP00000199534 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | F2Z3L9 | |
| NUP50-018 | OTTHUMT00000322010.1 | 821 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| NUP50-014 | OTTHUMT00000322006.1 | 550 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| NUP50-008 | OTTHUMT00000322000.1 | 531 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| NUP50-019 | OTTHUMT00000322011.1 | 493 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| NUP50-012 | OTTHUMT00000322004.1 | 478 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| NUP50-015 | OTTHUMT00000322007.1 | 431 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| NUP50-004 | OTTHUMT00000321996.1 | 3507 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| NUP50-006 | OTTHUMT00000321998.1 | 986 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
