Description
ATG4 autophagy related 4 homolog B (S. cerevisiae)
Synonyms
Apg4B, AUTL1, KIAA0943, DKFZp586D1822
Location
Chromosome 2: 241,637,213-241,673,857 forward strand.
VEGA68:CM000664.2
About this gene
This gene has 29 transcripts (splice variants), 5 orthologues and 2 paralogues.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| ATG4B-001 | OTTHUMT00000322966.5 | 3294 | 380aa | OTTHUMP00000200147 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS46565 | - | |
| ATG4B-002 | OTTHUMT00000322967.3 | 2878 | 393aa | OTTHUMP00000200148 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS46564 | Q9Y4P1 | |
| ATG4B-006 | OTTHUMT00000322971.1 | 1685 | 331aa | OTTHUMP00000200150 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | |
| ATG4B-023 | OTTHUMT00000323009.2 | 807 | 266aa | OTTHUMP00000200161 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | C9JQ72 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| ATG4B-025 | OTTHUMT00000323011.11 | 663 | 219aa | OTTHUMP00000200162 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | C9JIK8 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| ATG4B-020 | OTTHUMT00000323006.2 | 623 | 105aa | OTTHUMP00000200159 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | C9JVD5 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| ATG4B-027 | OTTHUMT00000323013.2 | 580 | 193aa | OTTHUMP00000200164 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | H7C2A6 | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete |
| ATG4B-015 | OTTHUMT00000323002.2 | 553 | 66aa | OTTHUMP00000200158 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | C9J1C1 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| ATG4B-026 | OTTHUMT00000323012.2 | 524 | 147aa | OTTHUMP00000200163 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | C9J3C0 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| ATG4B-007 | OTTHUMT00000322972.1 | 1147 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| ATG4B-017 | OTTHUMT00000323004.1 | 581 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| ATG4B-009 | OTTHUMT00000322974.1 | 557 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| ATG4B-019 | OTTHUMT00000323005.1 | 537 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| ATG4B-005 | OTTHUMT00000322970.1 | 1566 | 76aa | OTTHUMP00000200149 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | H0Y2Y0 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| ATG4B-011 | OTTHUMT00000322998.1 | 625 | 88aa | OTTHUMP00000200157 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | F2Z2K8 | |
| ATG4B-022 | OTTHUMT00000323008.1 | 356 | 88aa | OTTHUMP00000200160 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | F2Z2K8 | |
| ATG4B-010 | OTTHUMT00000322997.1 | 435 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| ATG4B-004 | OTTHUMT00000322969.1 | 2414 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| ATG4B-003 | OTTHUMT00000322968.1 | 2365 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| ATG4B-008 | OTTHUMT00000322973.1 | 2237 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| ATG4B-012 | OTTHUMT00000322999.1 | 1103 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| ATG4B-024 | OTTHUMT00000323010.1 | 899 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| ATG4B-028 | OTTHUMT00000323014.1 | 871 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| ATG4B-029 | OTTHUMT00000323015.1 | 828 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| ATG4B-014 | OTTHUMT00000323001.1 | 762 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| ATG4B-021 | OTTHUMT00000323007.1 | 721 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| ATG4B-016 | OTTHUMT00000323003.1 | 581 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| ATG4B-013 | OTTHUMT00000323000.1 | 556 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| ATG4B-030 | OTTHUMT00000323016.1 | 374 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
