Description
ATG9 autophagy related 9 homolog A (S. cerevisiae)
Synonyms
FLJ22169
Location
Chromosome 2: 219,209,772-219,229,717 reverse strand.
VEGA68:CM000664.2
About this gene
This gene has 23 transcripts (splice variants), 2 orthologues and 1 paralogue.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| ATG9A-004 | OTTHUMT00000335930.1 | 4025 | 839aa | OTTHUMP00000206049 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS42820 | Q7Z3C6 | |
| ATG9A-001 | OTTHUMT00000335927.1 | 3799 | 839aa | OTTHUMP00000206046 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS42820 | Q7Z3C6 | |
| ATG9A-003 | OTTHUMT00000335929.1 | 3130 | 839aa | OTTHUMP00000206048 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS42820 | Q7Z3C6 | |
| ATG9A-021 | OTTHUMT00000335947.3 | 2512 | 778aa | OTTHUMP00000206062 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | |
| ATG9A-013 | OTTHUMT00000335939.2 | 893 | 187aa | OTTHUMP00000206057 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | C9JXG2 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| ATG9A-016 | OTTHUMT00000335942.2 | 796 | 144aa | OTTHUMP00000206058 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | C9IYZ9 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| ATG9A-023 | OTTHUMT00000335949.2 | 733 | 244aa | OTTHUMP00000206063 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete |
| ATG9A-012 | OTTHUMT00000335938.2 | 700 | 169aa | OTTHUMP00000206056 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | C9JKV7 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| ATG9A-008 | OTTHUMT00000335934.16 | 699 | 172aa | OTTHUMP00000206052 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | C9JDK4 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| ATG9A-018 | OTTHUMT00000335944.2 | 685 | 97aa | OTTHUMP00000206059 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | C9JFV2 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| ATG9A-009 | OTTHUMT00000335935.2 | 589 | 131aa | OTTHUMP00000206053 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | C9JX27 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| ATG9A-010 | OTTHUMT00000335936.2 | 581 | 133aa | OTTHUMP00000206054 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| ATG9A-019 | OTTHUMT00000335945.2 | 568 | 93aa | OTTHUMP00000206060 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | C9JS65 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| ATG9A-005 | OTTHUMT00000335931.1 | 3599 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| ATG9A-006 | OTTHUMT00000335932.1 | 5245 | 255aa | OTTHUMP00000206050 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| ATG9A-002 | OTTHUMT00000335928.1 | 3701 | 528aa | OTTHUMP00000206047 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| ATG9A-007 | OTTHUMT00000335933.1 | 576 | 98aa | OTTHUMP00000206051 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| ATG9A-011 | OTTHUMT00000335937.2 | 574 | 98aa | OTTHUMP00000206055 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| ATG9A-020 | OTTHUMT00000335946.2 | 558 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| ATG9A-017 | OTTHUMT00000335943.1 | 487 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| ATG9A-022 | OTTHUMT00000335948.1 | 812 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| ATG9A-015 | OTTHUMT00000335941.1 | 594 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| ATG9A-014 | OTTHUMT00000335940.1 | 579 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
