Description
SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)
Synonyms
ATX, LIP, KIAA0421
Location
Chromosome 16: 18,804,853-18,926,454 reverse strand.
VEGA68:CM000678.2
About this gene
This gene has 16 transcripts (splice variants) and 1 orthologue.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| SMG1-001 | OTTHUMT00000391817.1 | 16115 | 3661aa | OTTHUMP00000234388 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS45430 | Q96Q15 | |
| SMG1-005 | OTTHUMT00000435790.2 | 12465 | 3551aa | OTTHUMP00000256093 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | J3KRA9 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SMG1-006 | OTTHUMT00000435795.2 | 2910 | 853aa | OTTHUMP00000256096 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | H3BQN7 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SMG1-004 | OTTHUMT00000435799.2 | 2664 | 551aa | OTTHUMP00000257231 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SMG1-003 | OTTHUMT00000435800.2 | 2372 | 607aa | OTTHUMP00000257232 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | |
| SMG1-002 | OTTHUMT00000391818.5 | 1259 | 335aa | OTTHUMP00000234389 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SMG1-015 | OTTHUMT00000435803.2 | 565 | 56aa | OTTHUMP00000256098 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SMG1-013 | OTTHUMT00000435802.4 | 562 | 62aa | OTTHUMP00000256097 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SMG1-017 | OTTHUMT00000435797.2 | 550 | 85aa | OTTHUMP00000274711 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | A0A087X1K8 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SMG1-009 | OTTHUMT00000435798.2 | 1210 | 321aa | OTTHUMP00000258748 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | I3L144 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SMG1-014 | OTTHUMT00000435804.1 | 721 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SMG1-010 | OTTHUMT00000435794.1 | 4187 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SMG1-007 | OTTHUMT00000435801.1 | 2978 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SMG1-012 | OTTHUMT00000435792.2 | 2016 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SMG1-016 | OTTHUMT00000435791.2 | 964 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SMG1-018 | OTTHUMT00000435793.1 | 449 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
