Description
homeobox containing 1
Synonyms
FLJ21616, HOT1, HNF1LA, PBHNF
Location
Chromosome 8: 28,890,394-29,064,764 forward strand.
VEGA68:CM000670.2
About this gene
This gene has 17 transcripts (splice variants).
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| HMBOX1-001 | OTTHUMT00000255267.4 | 4082 | 420aa | OTTHUMP00000163064 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS6071 | Q6NT76 | |
| HMBOX1-002 | OTTHUMT00000376866.2 | 3184 | 420aa | OTTHUMP00000225640 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS6071 | Q6NT76 | |
| HMBOX1-014 | OTTHUMT00000417029.1 | 1765 | 405aa | OTTHUMP00000247737 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS83274 | - | |
| HMBOX1-006 | OTTHUMT00000376871.1 | 1731 | 443aa | OTTHUMP00000225644 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS83273 | - | |
| HMBOX1-003 | OTTHUMT00000417030.1 | 1730 | 396aa | OTTHUMP00000247738 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | H0YKJ1 | |
| HMBOX1-017 | OTTHUMT00000417034.2 | 1694 | 386aa | OTTHUMP00000273440 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | E5RGZ2 | |
| HMBOX1-005 | OTTHUMT00000376869.1 | 1551 | 386aa | OTTHUMP00000225642 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | E5RGZ2 | |
| HMBOX1-015 | OTTHUMT00000417031.2 | 1426 | 364aa | OTTHUMP00000247739 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | H0YLF2 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| HMBOX1-008 | OTTHUMT00000376867.2 | 811 | 118aa | OTTHUMP00000225641 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | E5RHH9 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| HMBOX1-007 | OTTHUMT00000376873.2 | 1911 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| HMBOX1-004 | OTTHUMT00000376870.2 | 2216 | 304aa | OTTHUMP00000225643 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| HMBOX1-012 | OTTHUMT00000376877.1 | 817 | 45aa | OTTHUMP00000225648 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| HMBOX1-010 | OTTHUMT00000376875.1 | 761 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| HMBOX1-011 | OTTHUMT00000417033.1 | 569 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| HMBOX1-009 | OTTHUMT00000376874.1 | 559 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| HMBOX1-013 | OTTHUMT00000417036.1 | 307 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| HMBOX1-016 | OTTHUMT00000417032.1 | 979 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
