Transcript: CHD5-005 OTTHUMT00000002827.2

Description

chromodomain helicase DNA binding protein 5

Location

Chromosome 1: 6,105,083-6,131,739 reverse strand.

About this transcript

This transcript has 21 exons and is annotated with 8 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000000952 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
CHD5-001	OTTHUMT00000002823.2	9646	1954aa	OTTHUMP00000001137	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS57	Q8TDI0
CHD5-003	OTTHUMT00000002825.2	558	90aa	OTTHUMP00000262641	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	K7EMC0	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
CHD5-007	OTTHUMT00000002829.3	3754	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
CHD5-002	OTTHUMT00000002824.4	4966	1225aa	OTTHUMP00000001138	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	F2Z2R5
CHD5-004	OTTHUMT00000002826.4	4396	1060aa	OTTHUMP00000262642	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	K7EMY3	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
CHD5-005	OTTHUMT00000002827.2	3044	110aa	OTTHUMP00000001139	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
CHD5-006	OTTHUMT00000002828.2	646	127aa	OTTHUMP00000262643	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Summary

Statistics

Exons: 21 Transcript length: 3,044 bps Translation length: 110 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 27/02/2014 (Created on 13/10/2003)

Alternative symbols

RP1-233K16.2-005

Remarks

translation extended by 137 amino acids at the N-terminal compared to the translation in Em:AK126012.1

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 6,105,083-6,131,739 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000377999

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: CHD5-005 OTTHUMT00000002827.2

Summary

Transcript-based displays