Transcript: DEPDC1-003 OTTHUMT00000025515.2

Description

DEP domain containing 1

Location

About this transcript

This transcript has 13 exons and is annotated with 6 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
DEPDC1-002	OTTHUMT00000025514.2	5331	811aa	OTTHUMP00000010790	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS44159	Q5TB30
DEPDC1-001	OTTHUMT00000025513.2	4586	527aa	OTTHUMP00000010789	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS644	-
DEPDC1-004	OTTHUMT00000025516.3	582	34aa	OTTHUMP00000010791	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
DEPDC1-003	OTTHUMT00000025515.2	1613	308aa	OTTHUMP00000229471	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	H0YES2	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
DEPDC1-005	OTTHUMT00000025517.1	2658	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 13 Transcript length: 1,613 bps Translation length: 308 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 27/02/2014 (Created on 12/01/2004)

Alternative symbols

RP4-694A7.1-003

Remarks

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 68,476,897-68,494,531 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000489862

Curation Method

Manual annotation from Havana