Transcript: COL17A1-002 OTTHUMT00000050182.1

Description

collagen, type XVII, alpha 1

Location

About this transcript

This transcript has 4 exons and is annotated with 2 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
COL17A1-001	OTTHUMT00000050181.1	5734	1497aa	OTTHUMP00000020422	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS7554	Q9UMD9
COL17A1-003	OTTHUMT00000050183.1	5488	1415aa	OTTHUMP00000020424	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
COL17A1-007	OTTHUMT00000313631.1	1610	417aa	OTTHUMP00000194844	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
COL17A1-002	OTTHUMT00000050182.1	537	66aa	OTTHUMP00000020423	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
COL17A1-006	OTTHUMT00000050186.1	420	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
COL17A1-005	OTTHUMT00000050185.1	626	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
COL17A1-004	OTTHUMT00000050184.1	622	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 4 Transcript length: 537 bps Translation length: 66 residues

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 28/02/2014 (Created on 30/05/2003)

Alternative symbols

RP11-16H23.2-002

Remarks

alternative 3' UTR

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 104,031,288-104,032,968 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000433822

Curation Method

Manual annotation from Havana