Transcript: HOXA9-003 OTTHUMT00000139974.3

Description

homeobox A9

Location

Chromosome 7: 27,163,521-27,165,526 reverse strand.

About this transcript

This transcript has 3 exons and is annotated with 4 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000023220 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt
HOXA9-001	OTTHUMT00000358706.2	2060	272aa	OTTHUMP00000217260	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS5409	P31269
HOXA9-003	OTTHUMT00000139974.3	797	106aa	OTTHUMP00000067789	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	A8MVF3
HOXA9-002	OTTHUMT00000139971.1	1393	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
HOXA9-004	OTTHUMT00000139973.1	693	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
HOXA9-006	OTTHUMT00000478255.1	657	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
HOXA9-005	OTTHUMT00000139972.1	521	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-

Summary

Statistics

Exons: 3 Transcript length: 797 bps Translation length: 106 residues

Class

Novel protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 3, last modified on 28/02/2014 (Created on 19/01/2005)

Alternative symbols

RP1-170O19.11-003

Remarks

NMD exception

This variant (called Hoxa9T) (Fujimoto et al 1998, PMID: 9524228) has been shown to be well conserved (back to chicken), to be expressed (by RT-PCR) and have some functional actvity in vitro (Dintilhac et al 2004, PMID: 15161102). Although the translation has not been shown in vivo, the protein is conserved in mouse

Other assemblies

This transcript maps to 27,163,521-27,165,526 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000396345

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: HOXA9-003 OTTHUMT00000139974.3

Summary

Transcript-based displays