Transcript: HLA-DMA-001 OTTHUMT00000076325.2

Description

major histocompatibility complex, class II, DM alpha

Location

Chromosome 6: 32,948,613-32,953,122 reverse strand.

About this transcript

This transcript has 5 exons and is annotated with 17 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000031173 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
HLA-DMA-001	OTTHUMT00000076325.2	1123	261aa	OTTHUMP00000029242	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS4761	Q31604
HLA-DMA-002	OTTHUMT00000276489.1	1007	227aa	OTTHUMP00000178727	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	Q5SP00
HLA-DMA-006	OTTHUMT00000276493.6	871	290aa	OTTHUMP00000178729	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	A0A140T9X4	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete
HLA-DMA-004	OTTHUMT00000276491.1	777	166aa	OTTHUMP00000178728	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	A2AAT8
HLA-DMA-009	OTTHUMT00000276542.2	611	169aa	OTTHUMP00000178756	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	A0A140T995	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
HLA-DMA-010	OTTHUMT00000276543.2	806	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
HLA-DMA-003	OTTHUMT00000276490.2	1735	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
HLA-DMA-005	OTTHUMT00000276492.1	984	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
HLA-DMA-007	OTTHUMT00000276494.1	657	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 5 Transcript length: 1,123 bps Translation length: 261 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS4761

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 28/02/2014 (Created on 23/01/2004)

Alternative symbols

XXbac-BPG181M17.3-001

Remarks

RZPD0834G061D

Other assemblies

This transcript maps to 32,948,613-32,953,122 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000374843

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: HLA-DMA-001 OTTHUMT00000076325.2

Summary

Transcript-based displays