Transcript: SYCP2-001 OTTHUMT00000079930.3

Description

synaptonemal complex protein 2

Location

Chromosome 20: 59,863,563-59,933,655 reverse strand.

About this transcript

This transcript has 45 exons and is annotated with 10 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000032872 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
SYCP2-001	OTTHUMT00000079930.3	5567	1530aa	OTTHUMP00000031430	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS13482	Q9BX26
SYCP2-002	OTTHUMT00000268132.2	3341	1023aa	OTTHUMP00000174469	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
SYCP2-008	OTTHUMT00000268138.2	625	208aa	OTTHUMP00000174471	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete
SYCP2-003	OTTHUMT00000268133.2	488	118aa	OTTHUMP00000174470	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
SYCP2-004	OTTHUMT00000268134.1	584	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
SYCP2-007	OTTHUMT00000268137.1	580	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
SYCP2-005	OTTHUMT00000268135.1	579	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
SYCP2-006	OTTHUMT00000268136.1	729	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 45 Transcript length: 5,567 bps Translation length: 1,530 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS13482

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 3, last modified on 28/02/2014 (Created on 20/03/2003)

Alternative symbols

RP5-884F15.1-001

Remarks

/at-ac\\ splicing between exons 5 and 6

DKFZp686I1629, DKFZp68601832

Other assemblies

This transcript maps to 59,863,563-59,933,655 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000357552

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: SYCP2-001 OTTHUMT00000079930.3

Summary

Transcript-based displays