Transcript: SDC1-005 OTTHUMT00000323934.2

Description

syndecan 1

Location

About this transcript

This transcript has 3 exons and is annotated with 4 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
SDC1-001	OTTHUMT00000207495.1	3147	310aa	OTTHUMP00000115942	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS1697	P18827
SDC1-002	OTTHUMT00000323931.1	1523	169aa	OTTHUMP00000200549	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	E9PHH3
SDC1-005	OTTHUMT00000323934.2	646	215aa	OTTHUMP00000200551	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	H7C1K4	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete
SDC1-003	OTTHUMT00000323932.1	1100	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
SDC1-004	OTTHUMT00000323933.1	591	28aa	OTTHUMP00000200550	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-
SDC1-006	OTTHUMT00000474533.1	558	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-

Summary

Statistics

Exons: 3 Transcript length: 646 bps Translation length: 215 residues

Class

Putative protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 09/07/2015 (Created on 28/01/2008)

Alternative symbols

AC104792.1-005

Remarks

CDS start not found

CDS end not found

mRNA start not found

mRNA end not found

Other assemblies

This transcript maps to 20,203,818-20,224,280 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000429035

Curation Method

Manual annotation from Havana