Transcript: SMN1-005 OTTHUMT00000372645.2

Description

survival of motor neuron 1, telomeric

Location

Chromosome 5: 70,942,508-70,946,079 forward strand.

About this transcript

This transcript has 5 exons and is annotated with 4 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000099361 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
SMN1-001	OTTHUMT00000216805.3	1536	294aa	OTTHUMP00000125198	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS34181	Q16637
SMN1-007	OTTHUMT00000373721.1	1445	282aa	OTTHUMP00000224066	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS75256	-
SMN1-008	OTTHUMT00000379154.1	1219	262aa	OTTHUMP00000226924	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS34182	-
SMN1-002	OTTHUMT00000372642.2	1308	227aa	OTTHUMP00000223567	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	B4DP61
SMN1-003	OTTHUMT00000372643.2	1550	294aa	OTTHUMP00000223568	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	E7EQZ4
SMN1-005	OTTHUMT00000372645.2	431	79aa	OTTHUMP00000226925	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	H0YBZ9	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
SMN1-004	OTTHUMT00000372644.3	1045	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
SMN1-009	OTTHUMT00000373785.2	499	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
SMN1-010	OTTHUMT00000379155.1	453	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 5 Transcript length: 431 bps Translation length: 79 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 28/02/2014 (Created on 14/12/2009)

Alternative symbols

AC044797.1-005

Remarks

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 70,942,508-70,946,079 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000507905

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: SMN1-005 OTTHUMT00000372645.2

Summary

Transcript-based displays